PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G142700.1
Common NameB456_002G142700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 171aa    MW: 19481.6 Da    PI: 9.0718
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G142700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.51.7e-28959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+i+n + rqvtfskRr g++KKAeELSvLCdaeva+iifs tgkl+e++s
  Gorai.002G142700.1  9 KKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFAS 59
                        68***********************************************86 PP

2K-box34.67.9e-13931552486
               K-box  24 LkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                         L ke+    +++R++ GedL+ L++ eLqqLe+ Le++l++  ++K e ++++i+ l  k   
  Gorai.002G142700.1  93 LSKEVADKTHQLRQMRGEDLQGLNIDELQQLEKLLESGLTRGLETKGERIMNEISSLETKVST 155
                         555555556788*********************************************999765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.263161IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-39160IPR002100Transcription factor, MADS-box
CDDcd002653.60E-39274No hitNo description
PRINTSPR004041.9E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-31374IPR002100Transcription factor, MADS-box
PfamPF003192.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.91683170IPR002487Transcription factor, K-box
PfamPF014863.8E-1091155IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MAREKIKIKK IDNLTARQVT FSKRRRGLFK KAEELSVLCD AEVALIIFSA TGKLFEFASS  60
SMKDMLGRYN LHSNKLDQPS LELQLENTNE ISLSKEVADK THQLRQMRGE DLQGLNIDEL  120
QQLEKLLESG LTRGLETKGE RIMNEISSLE TKVSTMDLIF FLKYLVRSNI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-20173173Myocyte-specific enhancer factor 2B
1tqe_Q9e-20173173Myocyte-specific enhancer factor 2B
1tqe_R9e-20173173Myocyte-specific enhancer factor 2B
1tqe_S9e-20173173Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556490.0KC155649.1 Gossypium hirsutum MADS box protein MADS54 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466790.11e-105PREDICTED: MADS-box protein SVP-like isoform X5
SwissprotQ9FVC11e-76SVP_ARATH; MADS-box protein SVP
TrEMBLA0A0D2NMX01e-120A0A0D2NMX0_G
STRINGVIT_18s0001g07460.t013e-79(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.16e-78MIKC_MADS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]